2023

Articles dans une revue

Jean Cacheux, Jose Ordonez-Miranda, Aurélien Bancaud, Laurent Jalabert, Daniel Alcaide, et al.. Asymmetry of tensile versus compressive elasticity and permeability contributes to the regulation of exchanges in collagen gels. Science Advances , 2023, 9 (31), ⟨10.1126/sciadv.adf9775⟩. ⟨hal-04235287⟩

Daniel Alcaide, Jean Cacheux, Aurélien Bancaud, Rieko Muramatsu, Yukiko T Matsunaga. Solute transport in the brain tissue: what are the key biophysical parameters tying in vivo and in vitro studies together?. Biomaterials Science, 2023, 10, pp.3450-3460. ⟨10.1039/D3BM00027C⟩. ⟨hal-04063141⟩

Paul Bruand, Inga Tijunelyte, Adrien Castinel, Cécile Donnadieu, Pierre Joseph, et al.. Size Fractionation of Milliliter DNA Samples in Minutes Controlled by an Electric Field of ∼10 V. Analytical Chemistry, 2023, 95 (49), pp.18099-18106. ⟨10.1021/acs.analchem.3c03187⟩. ⟨hal-04322873⟩

Jean Cacheux, Aurélien Bancaud, Daniel Alcaide, Jun-Ichi Suehiro, Yoshihiro Akimoto, et al.. Endothelial tissue remodeling induced by intraluminal pressure enhances paracellular solute transport. iScience, 2023, 26 (7), pp.107141. ⟨10.1016/j.isci.2023.107141⟩. ⟨hal-04250976⟩

2022

Articles dans une revue

Inga Tijunelyte, Jeffrey Teillet, Paul Bruand, Rémi Courson, Aurélie Lecestre, et al.. Hybridization-based DNA biosensing with a limit of detection of 4 fM in 30 s using an electrohydrodynamic concentration module fabricated by grayscale lithography. Biomicrofluidics, 2022, 16 (4), pp.044111. ⟨10.1063/5.0073542⟩. ⟨hal-03771547⟩

Communications dans un congrès

Paul Bruand, Inga Tijunelyte, Frédéric Ginot, Pierre Joseph, Aurélien Bancaud. Purification and size-fractionation of milli-liter DNA samples in minutes using electrohydrodynamic migration. MSB 2022 (Internation Synmposium on Miscroscale Separations and Bioanalysis), Jul 2022, Liège, Belgium. ⟨hal-03818343⟩

Aurélien Bancaud. Deformation but not convection induced by intraluminal pressure enhances transport through barrier tissues. BTI : first international conference on Blood Tissue Interfaces, Oct 2022, Montpellier, France. ⟨hal-03821260⟩

2021

Articles dans une revue

Inga Tijunelyte, Rémi Malbec, Bayan Chami, Jean Cacheux, Christophe Dez, et al.. micro-RNA 21 detection with a limit of 2 pM in 1 min using a size-accordable concentration module operated by electrohydrodynamic actuation. Biosensors and Bioelectronics, 2021, 178, pp.112992. ⟨10.1016/j.bios.2021.112992⟩. ⟨hal-03449104⟩

Inga Tijunelyte, Rémi Malbec, Bayan Chami, Jean Cacheux, Christophe Dez, et al.. micro-RNA 21 detection with a limit of 2 pM in 1 min using a size-accordable concentration module operated by electrohydrodynamic actuation. Biosensors and Bioelectronics, 2021, 178, pp.112992. ⟨10.1016/j.bios.2021.112992⟩. ⟨hal-03444566⟩

2020

Articles dans une revue

Nicolas Milon, Juan-Luis Fuentes Rojas, Adrien Castinel, Laurent Bigot, Géraud Bouwmans, et al.. A tunable filter for high molecular weight DNA selection and linked-read sequencing. Lab on a Chip, 2020, 20 (1), pp.175-184. ⟨10.1039/C9LC00965E⟩. ⟨hal-02400601⟩

Jeffrey Teillet, Quentin Martinez, Inga Tijunelyte, Bayan Chami, Aurélien Bancaud. Characterization and minimization of band broadening in DNA electrohydrodynamic migration for enhanced size separation. Soft Matter, 2020, 16 (24), pp.5640-5649. ⟨10.1039/D0SM00475H⟩. ⟨hal-03024741⟩

Bayan Chami, Nicolas Milon, Juan-Luis Fuentes Rojas, Samuel Charlot, Jean-Christophe Marrot, et al.. Single-step electrohydrodynamic separation of 1–150 kbp in less than 5 min using homogeneous glass/adhesive/glass microchips. Talanta, 2020, 217, pp.121013. ⟨10.1016/j.talanta.2020.121013⟩. ⟨hal-03024740⟩

Communications dans un congrès

Jean Cacheux, Aurélien Bancaud, Jose Ordonez-Miranda, Laurent Jalabert, Yukiko T Matsunaga. Collagen matrix remodeling by fibroblasts monitored by interstitial flow metrology. Microphysiological systems: from organoids to organ-on-chip, Apr 2020, Cargèse, France. ⟨hal-03821244⟩

2019

Articles dans une revue

Marius Socol, Renjie Wang, Daniel Jost, Pascal Carrivain, Cédric Vaillant, et al.. Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes. Nucleic Acids Research, 2019, 47 (12), pp.6195-6207. ⟨10.1093/nar/gkz374⟩. ⟨hal-04550349⟩

Rémi Malbec, Bayan Chami, Lorène Aeschbach, Gustavo Ruiz Buendía, Marius Socol, et al.. µLAS: Sizing of expanded trinucleotide repeats with femtomolar sensitivity in less than 5 minutes. Scientific Reports, 2019, 9, pp.23. ⟨10.1038/s41598-018-36632-5⟩. ⟨hal-01997319⟩

Marius Socol, Hubert Ranchon, Bayan Chami, Antony Lesage, Jean-Marc Victor, et al.. Contraction and Tumbling Dynamics of DNA in Shear Flows under Confinement Induced by Transverse Viscoelastic Forces. Macromolecules, 2019, 52 (4), pp.1843-1852. ⟨10.1021/acs.macromol.8b02184⟩. ⟨hal-02076283⟩

Nicolas Milon, Céline Chantry-Darmon, Carine Satge, Margaux-Alison Fustier, Stéphane Cauet, et al.. μLAS technology for DNA isolation coupled to Cas9-assisted targeting for sequencing and assembly of a 30 kb region in plant genome. Nucleic Acids Research, 2019, 47 (15), pp.8050-8060. ⟨10.1093/nar/gkz632⟩. ⟨hal-02338524⟩

Nicolas Milon, Céline Chantry-Darmon, Carine Satge, Margaux-Alison Fustier, Stephane Cauet, et al.. μLAS technology for DNA isolation coupled to Cas9-assisted targeting for sequencing and assembly of a 30 kb region in plant genome. Nucleic Acids Research, 2019, 47 (15), pp.8050-8060. ⟨10.1093/nar/gkz632⟩. ⟨hal-04198284⟩

Marius Socol, Renjie Wang, Daniel Jost, Pascal Carrivain, Cédric Vaillant, et al.. Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes. Nucleic Acids Research, 2019, 47 (12), pp.6195-6207. ⟨10.1093/nar/gkz374⟩. ⟨hal-02276944⟩

Jean Cacheux, Aurélien Bancaud, Thierry Leichle, Pierre Cordelier. Technological Challenges and Future Issues for the Detection of Circulating MicroRNAs in Patients With Cancer. Frontiers in Chemistry, 2019, 7, ⟨10.3389/fchem.2019.00815⟩. ⟨hal-02392369⟩

2018

Articles dans une revue

Hubert Ranchon, Jean Cacheux, Benjamin Reig, Olivier Liot, Pattamon Teerapanich, et al.. Accelerated transport of particles in confined channels with high roughness amplitude. Langmuir, 2018, 34 (4), pp.1394-1399. ⟨10.1021/acs.langmuir.7b03962⟩. ⟨hal-01682628⟩

Théo Calais, Aurélien Bancaud, Alain Estève, Carole Rossi. Correlation between DNA Self-Assembly Kinetics, Microstructure, and Thermal Properties of Tunable Highly Energetic Al–CuO Nanocomposites for Micropyrotechnic Applications. ACS Applied Nano Materials, 2018, 1 (9), pp.4716-1425. ⟨10.1021/acsanm.8b00939⟩. ⟨hal-01874446⟩

Srdana Grgurevic, Patricia Montilla-Perez, Alice Bradbury, Julia Gilhodes, Sophie Queille, et al.. DNA polymerase ν gene expression influences fludarabine resistance in chronic lymphocytic leukemia independently of p53 status. Haematologica, 2018, 103 (6), pp.1038-1046. ⟨10.3324/haematol.2017.174243⟩. ⟨hal-02347541⟩

Rémi Malbec, Jean Cacheux, Pierre Cordelier, Thierry Leichle, Pierre Joseph, et al.. Microfluidics for minute DNA sample analysis: open challenges for genetic testing of cell-free circulating DNA in blood plasma. Micro and Nano Engineering, 2018, 1, pp.25-32. ⟨10.1016/j.mne.2018.10.003⟩. ⟨hal-02338521⟩

Comtet-Louis Andriamanampisoa, Aurélien Bancaud, Audrey Boutonnet-Rodat, Audrey Didelot, Jacques Fabre, et al.. BIABooster: Online DNA Concentration and Size Profiling with a Limit of Detection of 10 fg/μL and Application to High-Sensitivity Characterization of Circulating Cell-Free DNA. Analytical Chemistry, 2018, 90 (6), pp.3766-3774. ⟨10.1021/acs.analchem.7b04034⟩. ⟨inserm-02304850⟩

Bayan Chami, Marius Socol, Manoel Manghi, Aurélien Bancaud. Modeling of DNA transport in viscoelastic electro-hydrodynamic flows for enhanced size separation. Soft Matter, 2018, 14 (24), pp.5069-5079. ⟨10.1039/C8SM00611C⟩. ⟨hal-01915345⟩

Jean Cacheux, Marie Brut, Aurélien Bancaud, Pierre Cordelier, Thierry Leichle. Spatial Analysis of Nanofluidic-Embedded Biosensors for Wash-Free Single-Nucleotide Difference Discrimination. ACS Sensors, 2018, 3 (3), pp.606 - 611. ⟨10.1021/acssensors.7b00667⟩. ⟨hal-01762631⟩

Srdana Grgurevic, Patricia Montilla-Perez, Alice Bradbury, Julia Gilhodes, Sophie Queille, et al.. DNA polymerase ν gene expression influences fludarabine resistance in chronic lymphocytic leukemia independently from p53 status. Haematologica, 2018, 104 (2). ⟨hal-02012166⟩

Communications dans un congrès

Aurélien Bancaud. DNA concentration, purification and identification with µLAS microreactor: (i) identification of DNA biomarkers in the blood, and (ii) Cas9- targeted sequencing. NanoBio&Med 2018, Nov 2018, Barcelona, Spain. ⟨hal-02012228⟩

Aurélien Bancaud. Technologies for residual DNA analysis: identification of biomarkers in blood plasma and detection of environmental threat with environmental DNA. International workshop on new micro technology and translational approaches fo rorgan regeneration and cancer therapies, Jun 2018, Tokyo, Japan. ⟨hal-02012231⟩

2017

Articles dans une revue

Thomas T Germier, Silvia Kocanova, Nike N Walther, Aurélien Bancaud, Haitham Ahmed H A Shaban, et al.. Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement. Biophysical Journal, 2017, 113 (7), pp.1383 - 1394. ⟨10.1016/j.bpj.2017.08.014⟩. ⟨hal-01682625⟩

Théo Calais, David Bourrier, Aurélien Bancaud, Yves J. Chabal, Alain Estève, et al.. DNA grafting and arrangement on oxide surfaces for self-assembly of Al and CuO nanoparticles. Langmuir, 2017, 33 (43), pp.12193-12203. ⟨10.1021/acs.langmuir.7b02159⟩. ⟨hal-01613194⟩

Chapitres d’ouvrages

Aurélien Bancaud, Olivier Gadal, Kerstin Bystricky. Capturing Chromosome Structural Properties From Their Spatial and Temporal Fluctuations. Epigenetics and Systems Biology, 2017, 9780128030752. ⟨hal-01682736⟩

Communications dans un congrès

Bayan Chami, Rémi Malbec, Marius Socol, Aurélien Bancaud. LAB-ON-CHIP FOR DNA ANALYSIS WITH LOW RESOLUTION LENGTH AND CONCENTRATION. Instrumenter et Innover en Chimie Physique pour Préparer l'Avenir, May 2017, Paris, France. ⟨hal-01686190⟩

Rémi Malbec, Bayan Chami, H. Ngo, A Didelot, F Garlan, et al.. Direct characterization of circulating DNA in blood plasma using µLAS technology. 63rd International Electron Devices Meeting (IEDM 2017), Dec 2017, San Francisco, CA, United States. 4p. ⟨hal-01686167⟩

Bayan Chami, Marius Socol, Aurélien Bancaud. LAB-ON-CHIP FOR DNA CONCENTRATION AND SEPARATION WITH A RESOLUTION LENGTH OF 6 BP. 3rd Conference on MicroFluidic Handling Systems, Oct 2017, Enschede, Netherlands. 4p. ⟨hal-01686194⟩

Autres documents

Bayan Chami, Marius Socol, Rémi Malbec, Aurélien Bancaud. Lab-on-Chip for DNA Analysis With Resolution Length of 3 bp and Concentration of 10 nM. MICROFLUIDICS2017-Ecole thématique, Jun 2017, Carcans Maubuisson, France. 2017. ⟨hal-01686185⟩

Jean Cacheux, Marie Brut, Aurélien Bancaud, Pierre Cordelier, Thierry Leichle. Rapid Discrimination Of Single-Nucleotide Differences Through The Spatial Analysis Of A Nanofluidic-Embedded Biosensor. MicroTAS, Oct 2017, Savannah, United States. 2017. ⟨hal-01699274⟩

Pré-publications, documents de travail

Thomas T Germier, Silvia Kocanova, Nike N Walther, Aurélien Bancaud, Haitham Ahmed H A Shaban, et al.. Real-time chromatin dynamics at the single gene level during transcription activation. 2017. ⟨hal-01587450⟩

2016

Articles dans une revue

Hubert Ranchon, Rémi Malbec, Vincent Picot, Audrey Boutonnet, Pattamon Teerapanich, et al.. DNA separation and enrichment using electro-hydrodynamic bidirectional flows in viscoelastic liquids. Lab on a Chip, 2016, 16 (7), pp.1243-1253. ⟨10.1039/c5lc01465d⟩. ⟨hal-01306024⟩

Ana Trapaidze, Jean-Pascal Hérault, Jean-Marc Herbert, Aurélien Bancaud, Anne Marie Gué. Investigation of the selectivity of thrombin-binding aptamers for thrombin titration in murine plasma. Biosensors and Bioelectronics, 2016, 78, pp.58 - 66. ⟨10.1016/j.bios.2015.11.017⟩. ⟨hal-01682623⟩

Joris Lacroix, Sandrine Pélofy, Marie-Charline Blatché, Marie-Jeanne Pillaire, Sébastien Huet, et al.. Analysis of DNA Replication by Optical Mapping in Nanochannels. Small, 2016, 12 (43), pp.5963-5970. ⟨10.1002/smll.201503795⟩. ⟨hal-01384735⟩

Communications dans un congrès

Aurélien Bancaud. Detection of traces of DNA using microfluidic concentration: application to the detection of circulating DNA in the blood plasma. 8th French-Spanish workshop IBERNAM-CMC2 Workshop, Oct 2016, Toulouse, France. ⟨hal-02012208⟩

Jean Cacheux, Aurélien Bancaud, Pierre Cordelier, Thierry Leichle. Fast single-nucleotide polymorphism (SNP) discrimination using a fluorescence-based nanofluidic platform. NanoBioTech, Nov 2016, Montreux, Switzerland. ⟨hal-01857479⟩

Aurélien Bancaud. High sensitivity detection of DNA with microfluidics: transfer of a technology dedicated to the profiling of circulating DNA. XIIth workshop of the Canceropole GSO, Oct 2016, Montpellier, France. ⟨hal-02012222⟩

2015

Articles dans une revue

Renjie Wang, Julien Mozziconacci, Aurélien Bancaud, Olivier Gadal. Principles of chromatin organization in yeast: relevance of polymer models to describe nuclear organization and dynamics. Current Opinion in Cell Biology, 2015, 34, pp.54 - 60. ⟨10.1016/j.ceb.2015.04.004⟩. ⟨hal-01682615⟩

Ana Trapaidze, Aurélien Bancaud, Marie Brut. Binding modes of thrombin binding aptamers investigated by simulations and experiments. Applied Physics Letters, 2015, 106 (4), pp.043702. ⟨10.1063/1.4906594⟩. ⟨hal-01137420⟩

Hubert Ranchon, Vincent Picot, Aurélien Bancaud. Metrology of confined flows using wide field nanoparticle velocimetry. Scientific Reports, 2015, 5 (1), ⟨10.1038/srep10128⟩. ⟨hal-01682611⟩

Marie Brut, Ana Trapaidze, Serge Mazères, Daniel Estève, Anne Marie Gué, et al.. Thrombin detection in murine plasma using engineered fluorescence resonance energy transfer aptadimers. Applied Physics Letters, 2015, 107 (23), pp.233701-1-233701-4. ⟨10.1063/1.4937351⟩. ⟨hal-01801826⟩

Communications dans un congrès

Aurélien Bancaud. Motion analysis of chromosomes in budding yeast: Evidence for Rouse dynamics in DNA, chromatin, and chromosomes. Stochastic Modeling of Anomalous Dynamics in Complex Physical and Biological Systems, May 2015, Wroclaw, Poland. ⟨hal-02012202⟩

Aurélien Bancaud, Marius Socol, Victor Conde, Renjie Wang, Olivier Gadal. Chromosome dynamics & transcription: dissection of chromatin structural properties in living yeast. 4th International Symposium of the Mathematics on Chromatin Live Dynamics ( ISMCD 2015), Dec 2015, Hiroshima, Japan. ⟨hal-02012200⟩

Aurélien Bancaud. Motion analysis of chromosomes in budding yeast: DNA, chromatin, and chromosomes under the microscope. InterLabex Symposium on Nuclear Dynamics & Organization, May 2015, Paris, France. ⟨hal-02012193⟩

2014

Articles dans une revue

Sébastien Huet, Christophe Lavelle, Hubert Ranchon, Pascal Carrivain, Jean-Marc Victor, et al.. Relevance and limitations of crowding, fractal, and polymer models to describe nuclear architecture.. International Review of Cell and Molecular Biology, 2014, 307, pp.443-79. ⟨10.1016/B978-0-12-800046-5.00013-8⟩. ⟨hal-00979005⟩

Communications dans un congrès

Aurélien Bancaud, Hubert Ranchon, Vincent Picot, Joris Lacroix. Confined flow hydrodynamics for DNA separation. Nanofluidics in physics and biology, Oct 2014, Lausanne, Switzerland. ⟨hal-02012187⟩