Laboratoire d’Analyse et d’Architecture des Systèmes
A.HEMERYCK, A.ESTEVE, N.RICHARD, M.DJAFARI ROUHANI, G.LANDA
CEA-DAM, N2IS
Revue Scientifique : Surface Science, Vol.603, N°13, pp.2132-2137, Juillet 2009 , N° 09009
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A kinetic Monte Carlo study of the early stage of silicon oxidation is presented. The model assembles the most recently published dedicated surface mechanisms: oxygen incorporations, migrations, charge transfer effects. Simulations of the thermal oxidation at typical manufacturing temperature and pressure conditions are discussed. As revealed recently through Density Functional Theory investigations, we observe hexagonal patterns that can be here extended over the surface giving rise to a new model system of the Si/SiO2 interface as well as new associated specific defects. We show that our simulator is able to reproduce correctly the oxidation states of the silicon atoms which are specific of the Si/SiO2 interface.
M.PETRANTONI, A.HEMERYCK, J.M.DUCERE, A.ESTEVE, C.ROSSI, M.DJAFARI ROUHANI, D.ESTEVE, G.LANDA
N2IS
Manifestation sans acte : E-MRS 2009 , Strasbourg (France), 8-12 Juin 2009 , N° 09661
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120156A.HEMERYCK, J.M.DUCERE, A.ESTEVE, M.DJAFARI ROUHANI, G.LANDA, C.TROPIS, P.MENINI, A.MAISONNAT, P.FAU, B.CHAUDRET
N2IS, M2D, LCC
Manifestation avec acte : E-MRS Spring Meeting 2009, Strasbourg (France), 8-12 Juin 2009, 1p. (Résumé) , N° 09527
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118879J.M.DUCERE, A.HEMERYCK, A.ESTEVE, M.DJAFARI ROUHANI, G.LANDA, C.TROPIS, P.MENINI, A.MAISONNAT, P.FAU, B.CHAUDRET
M2D, LCC, N2IS
Manifestation avec acte : E-MRS Spring Meeting 2009, Strasbourg (France), 8-12 Juin 2009, 1p. (Résumé) , N° 09529
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118896A.HEMERYCK, M.PETRANTONI, A.ESTEVE, C.ROSSI, M.DJAFARI ROUHANI, G.LANDA, D.ESTEVE
N2IS
Manifestation avec acte : E-MRS Spring Meeting 2009, Strasbourg (France), 8-12 Juin 2009, 17p. , N° 09481
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A.ESTEVE, M.DJAFARI ROUHANI, A.DKHISSI, C.MASTAIL, G.LANDA, A.HEMERYCK, N.RICHARD
N2IS, CEA-DAM
Revue Scientifique : Techniques de l'Ingénieur, Vol.RE 123, pp.Re 123-1-RE 123-12, Avril 2009 , N° 08630
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123999J.M.DUCERE, A.HEMERYCK, A.ESTEVE, M.DJAFARI ROUHANI, G.LANDA, C.TROPIS, P.MENINI, A.MAISONNAT, P.FAU, B.CHAUDRET
N2IS, M2D, LCC
Manifestation sans acte : GDR-DFT++, Dourdan (France), 2-6 Février 2009, 1p. (Résumé) , N° 09528
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118894A.HEMERYCK, N.RICHARD, A.ESTEVE, M.DJAFARI ROUHANI, G.LANDA, Y.J.CHABAL, A.J.MAYNE, G.DUJARDIN, G.COMTET
N2IS, CEA-DAM, University of Texas, LPM Orsay
Manifestation sans acte : GDR-DFT++, Dourdan (France), 2-6 Février 2009, 1p. (Résumé) , N° 09530
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118898M.PETRANTONI, A.HEMERYCK, J.M.DUCERE, A.ESTEVE, C.ROSSI, M.DJAFARI ROUHANI, D.ESTEVE, G.LANDA
N2IS
Manifestation sans acte : GDR-DFT++, Dourdan (France), 2-6 Février 2009, 1p. (Résumé) , N° 09531
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118900M.BRUT, A.ESTEVE, G.LANDA, G.RENVEZ, M.DJAFARI ROUHANI
N2IS
Revue Scientifique : The European Physical Journal E: Soft Matter and Biological Physics, Vol.28, N°1, pp.17-25, Janvier 2009 , N° 08020
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We present a new competitive method for the atomic scale treatment of macromolecular flexibility called Static Mode method. This method is based on the "induced-fit" concept, i.e. it maps the intrinsic deformations of a macromolecule subject to diverse external excitations. The algorithm makes it possible to obtain a set of deformations, each one corresponding to a specific interaction on a specific molecular site, in terms of force constants contained in the energy model. In this frame, the docking problem can be expressed in terms of interaction sites between the two molecules, the molecular deformations being extracted from the pre-calculated Static Modes of each molecule. Some preliminary basic examples aimed at illustrating potential applications where macro- or bio-molecular flexibility is of key importance are given: flexibility inducing conformational changes in the case of furanose ring and flexibility for the characterization, including allostery, of poly(N-isopropylacrylamide)(P-NIPAM) active sites. We also discuss how this procedure allows "induced-fit" flexible molecular docking, beyond state-of-the-art semi-rigid methods.